[1] D. A. Jatraningrum, R. K. Jati, S. Maludin, R. Manalu, R. L. Helmi, and W. Hermawati, “Triple helix collaboration in Indonesia’s Covid-19 vaccine development: understanding the barriers and enablers,” STI Policy and Management Journal, vol. 6, no. 2, 2021.
[2] Y. Zhang et al., “Innovation-driven trend shaping COVID-19 vaccine development in China,” Frontiers of Medicine, vol. 17, no. 6, pp. 1096-1116, 2023.
[3] Y. Zeng et al., “DNA Origami Vaccine (DoriVac) Nanoparticles Improve Both Humoral and Cellular Immune Responses to Infectious Diseases,” bioRxiv, p. 2023.12.29.573647, 2024.
[4] Y. C. Zeng et al., “Fine tuning of CpG spatial distribution with DNA origami for improved cancer vaccination,” Nature Nanotechnology, vol. 19, no. 7, pp. 1055-1065, 2024.
[5] N. E. Holodick and T. L. Rothstein, “B cells in the aging immune system: time to consider B‐1 cells,” Annals of the New York Academy of Sciences, vol. 1362, no. 1, pp. 176-187, 2015.
[6] J. J. Knox, A. Myles, and M. P. Cancro, “T‐bet+ memory B cells: generation, function, and fate,” Immunological Reviews, vol. 288, no. 1, pp. 149-160, 2019.
[7] C. E. Martinez-Olivares, R. Hernández-Pando, and E. Mixcoha, “In silico EsxG EsxH rational epitope selection: Candidate epitopes for vaccine design against pulmonary tuberculosis,” PLoS ONE, vol. 18, no. 4, p. e0284264, 2023.
[8] R. Veneziano et al., “Role of nanoscale antigen organization on B-cell activation probed using DNA origami,” Nature Nanotechnology, vol. 15, no. 8, pp. 716-723, 2020.
[9] J. Zhang et al., “Elucidating the effect of nanoscale receptor-binding domain organization on SARS-CoV-2 infection and immunity activation with DNA origami,” Journal of the American Chemical Society, vol. 144, no. 46, pp. 21295-21303, 2022.
[10] Q. Feng et al., “Rationally designed multimeric nanovaccines using icosahedral DNA origami for display of SARS-CoV-2 receptor binding domain,” Nature Communications, vol. 15, no. 1, p. 9581, 2024.
[11] P. W. Rothemund, “Folding DNA to create nanoscale shapes and patterns,” Nature, vol. 440, no. 7082, pp. 297-302, 2006.
[12] R. Khosravi, M. Mogheiseh, R. Hasanzadeh Ghasemi, “An analysis on the effect of layer number on the stability of thin DNA origami nanopores,” Multidiscipline Modeling in Materials and Structures, vol. 21, no. 1, pp. 19-37, 2025.
[13] M. Mogheiseh, R. Hasanzadeh Ghasemi, “Structural stability of wireframe DNA origami: The role of nanocomponent modifications,” The Journal of Chemical Physics, vol. 162, no. 15, 2025.
[14] S. Dastorani, M. Shariati, R. Hasanzadeh Ghasemi, “Comparison of the bending behavior of DNA origami Nano beam using the nonlinear theory method and steered molecular dynamics simulation,” Nano World, vol. 19, no. 73, pp. 45-54, 2024.
[15] A. Ekrami, R. Hasanzadeh Ghasemi, “Investigating ionic conductivity effects on DNA origami nanopore structure,” Journal of Biomolecular Structure and Dynamics, pp. 1-11, 2025.
[16] M. Mogheiseh, R. Hasanzadeh Ghasemi, “Design and simulation of a wireframe DNA origami nanoactuator,” The Journal of Chemical Physics, vol. 161, no. 4, 2024.
[17] M. Mogheiseh, R. H. Ghasemi, “Wireframe DNA origami nanostructure with the controlled opening of edges,” Molecular Systems Design & Engineering, vol. 10, no. 1, pp. 68-80, 2025.
[18] M. Mogheiseh, E. Etemadi, and R. Hasanzadeh Ghasemi, “Design, molecular dynamics simulation, and investigation of the mechanical behavior of DNA origami nanotubes with auxetic and honeycomb structures,” Journal of Biomolecular Structure and Dynamics, vol. 41, no. 24, pp. 14822-14831, 2023.
[19] E. Vernhes, L. L. Chérif, N. Ducrot, C. Vanbergue, M. Ouldali, L. Zig, N. Sidibe, S. Hoos, L. Ramirez-Chamorro, M. Renouard, O. Rossier, P. England, G. Schoehn, P. Boulanger, and K. Benihoud, “Antigen self-anchoring onto bacteriophage T5 capsid-like particles for vaccine design,” NPJ Vaccines, vol. 9, no. 1, p. 6, 2024.
[20] K. Zhang, Q. Feng, L. Zhang, et al., “Rationally designed multimeric nanovaccines using icosahedral DNA origami for display of SARS-CoV-2 receptor binding domain (RBD),” Nature Communications, vol. 15, no. 1, p. 9581, 2024.
[21] Eugene V. Koonin, Tatiana G. Senkevich, Valerian V. Dolja, “The Virus World and evolution of cells,” Biology Direct, 2006.
[22] C. Bartels, “Analyzing biased Monte Carlo and molecular dynamics simulations,” Chem. Phys. Lett., vol. 331, pp. 446–454, 2000.